Index A | B | C | D | E | F | G | H | L | M | N | P | R | S | T | U | V | X A adata (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) alpha_csr (mechanochat.SEM2 attribute) alpha_radius (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) alphashape (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) alphashape_info (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) alphashape_plot() (in module mechanochat.plotting) alphashape_plot3() (in module mechanochat.plotting) B beta (mechanochat.SEM2 attribute) biochemical_lr_communication() (in module mechanochat.tools) C ceidn (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) cell2grid() (in module mechanochat.tools) cell_size (mechanochat.SEM2 attribute) cluster_communication() (in module mechanochat.tools) color_list (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) compute_alphashape() (mechanochat.SEM2 method) (mechanochat.SEM3 method) compute_cell_forces() (mechanochat.SEM2 method) (mechanochat.SEM3 method) compute_contact() (mechanochat.SEM2 method) (mechanochat.SEM3 method) compute_convexhull() (mechanochat.SEM3 method) compute_distance() (mechanochat.SEM2 method) (mechanochat.SEM3 method) compute_element_energy() (mechanochat.SEM2 method) compute_force() (mechanochat.SEM2 method) compute_force_chunked() (mechanochat.SEM3 method) compute_pressure() (mechanochat.SEM2 method) compute_shape() (mechanochat.SEM3 method) compute_tensor() (mechanochat.SEM2 method) contact_analysis() (in module mechanochat.tools) contact_lr_communication() (in module mechanochat.tools) contact_matrix (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) contact_plot() (in module mechanochat.plotting) crosstalk_analysis() (in module mechanochat.tools) ctype (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) ctype_list (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) D deltax (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) dim (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) draw_colorbar() (in module mechanochat.plotting) draw_legend() (in module mechanochat.plotting) E ecid (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) element_plot() (in module mechanochat.plotting) F f_cc (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) f_pairs (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) f_pairs_tocsr() (mechanochat.SEM2 method) (mechanochat.SEM3 method) filter_db() (in module mechanochat.preprocessing) filter_lr_database() (in module mechanochat.preprocessing) forceij_plot() (in module mechanochat.plotting) G get_alpha() (mechanochat.SEM2 method) (mechanochat.SEM3 method) get_area() (mechanochat.SEM2 method) (mechanochat.SEM3 method) get_box() (mechanochat.SEM2 method) (mechanochat.SEM3 method) get_elements() (mechanochat.SEM2 method) (mechanochat.SEM3 method) get_neighbors() (mechanochat.SEM2 method) (mechanochat.SEM3 method) get_param() (mechanochat.SEM2 method) (mechanochat.SEM3 method) H he (mechanochat.SEM2 attribute) highlight_cell() (in module mechanochat.plotting) L ligand_receptor_database() (in module mechanochat.preprocessing) load_mechanochat_db() (in module mechanochat.preprocessing) load_sim() (mechanochat.SEM2 method) (mechanochat.SEM3 method) M mechanical_communication() (in module mechanochat.tools) N nc (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) ne (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) ne_per_cell (mechanochat.SEM2 attribute) ns_default (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) P pairs (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) param (mechanochat.SEM3 attribute) param_info (mechanochat.SEM2 attribute) plot_grid() (in module mechanochat.plotting) plot_grid_signal_direction() (in module mechanochat.plotting) plot_grid_signal_tensor() (in module mechanochat.plotting) plot_xc2grid() (in module mechanochat.plotting) pressure_analysis() (in module mechanochat.tools) R rc (mechanochat.SEM2 attribute) S save_sim() (mechanochat.SEM2 method) (mechanochat.SEM3 method) scale (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) select_cell() (mechanochat.SEM2 method) (mechanochat.SEM3 method) SEM2 (class in mechanochat) SEM3 (class in mechanochat) set_color() (mechanochat.SEM2 method) (mechanochat.SEM3 method) set_vertices_data() (mechanochat.SEM3 method) signal_adata() (in module mechanochat.preprocessing) signal_direction() (in module mechanochat.tools) signal_direction_plot() (in module mechanochat.plotting) signal_direction_plot3() (in module mechanochat.plotting) signal_enrichment() (in module mechanochat.tools) signal_tensor() (in module mechanochat.tools) sim_gpu() (mechanochat.SEM2 method) (mechanochat.SEM3 method) sim_name (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) spatial_distances (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) spatial_domain_comm_plot() (in module mechanochat.plotting) summarize_cluster() (in module mechanochat.tools) T t (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) U update_xc() (mechanochat.SEM2 method) (mechanochat.SEM3 method) V vis_contact_signal() (in module mechanochat.plotting) X xc (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute) xe (mechanochat.SEM2 attribute) (mechanochat.SEM3 attribute)