Plotting: `mc.pl`#

Visualization of reconstructed cell shapes, cell-cell forces and the spatial distribution of mechanical communication.

Cell shapes and contacts#

`element_plot`	Plotting cell elements
`alphashape_plot`	Plot cell shape using alpha shape, visualize cell data by colors.
`alphashape_plot3`	Render the reconstructed 3D cell shapes with PyVista.
`contact_plot`	Plot cell-cell contact mechanical signals as colored line segments.
`highlight_cell`	Highlight a group of cells with a unified color overlay using alpha shape.

`vis_contact_signal`	Visualize contact signals or relationships between cells
`signal_direction_plot`	Plot spatial directions of cell-cell communication using quiver arrows.
`signal_direction_plot3`	3D Plot spatial directions of cell-cell communication using quiver arrows.
`forceij_plot`	Plot intercellular forces between elements of selected cells using quiver arrows.
`spatial_domain_comm_plot`	Draw the significant communication between spatial domains on top of the tissue.

`plot_xc2grid`	Visual check of the cell-to-grid assignment produced by tl.cell2grid.
`plot_grid`	Draw the grid lines returned by tl.cell2grid as a dotted overlay.
`plot_grid_signal_direction`	Quiver plot of the grid-level signal directions from tl.signal_direction.
`plot_grid_signal_tensor`	Draw the grid-level signal orientation tensors from tl.signal_tensor.

`draw_colorbar`	Draw a standalone colorbar, e.g. one shared by several panels.
`draw_legend`	Draw a standalone cell type legend, e.g. one shared by several panels.