Preprocessing: mc.pp#

Loading and filtering of the ligand-receptor databases (CellChatDB, CellPhoneDB v4.0) and of the MechanoChat database of mechanotransduction-related genes. The databases ship inside the package under _data/.

ligand_receptor_database

Extract ligand-receptor pairs from LR database.

filter_lr_database

Filter ligand-receptor pairs.

load_mechanochat_db

Load the MechanoChat Database

filter_db

Filter the MechanoChat database by gene detection in the data.

signal_adata